Resources

Computing

• Discovery quickstart for lab members on a free account
• Request a Discovery account
• Introduction to HPC from Dartmouth Research Computing
• Discovery overview and cluster details
• Discovery tutorials
• Submitting jobs with sbatch and srun
• Scratch space
• Conda environments
• Open OnDemand, browser access to Discovery
• Connecting with SSH
• Research Computing system status
• Slurm documentation
• The Missing Semester of Your CS Education (shell, editors, Git)
• Pro Git

Machine learning

• PyTorch tutorials
• MONAI, medical imaging tools built on PyTorch
• timm, pretrained image models
• Hugging Face courses
• scikit-learn user guide

Public ophthalmic datasets

• Kermany OCT, labeled retinal OCT scans
• RFMiD, fundus photographs labeled for many retinal diseases
• AIROGS, glaucoma screening on fundus photographs
• ODIR-2019, paired fundus photographs with diagnostic labels
• EyePACS diabetic retinopathy (Kaggle 2015)
• APTOS 2019, diabetic retinopathy grading

Writing and references

• Overleaf for LaTeX
• Zotero for references
• Dartmouth Biomedical Libraries

Disclosing AI use

• How to disclose AI use in scientific writing
• ICMJE guidance on AI use by authors
• COPE position on authorship and AI tools
• Dartmouth Library guide on citing AI

Templates

Lab templates for talks, posters and figures.

Slides and posters

• 
  Slide template, 16:9PowerPoint
• 
  Poster template, 48 × 36 inPowerPoint
• 
  Poster template, 48 × 27 inPowerPoint

The slide template follows abstract order: title, disclosures, purpose, methods, results, conclusions, references, then questions. Headlines are full sentences that state the finding. See the talk tips.

MOOSE Lab logos

Download all logos (zip)

Wordmark

• 
  Same line, for white backgroundsPNG · SVG
• 
  Same line, for green backgroundsPNG
• 
  Lab under SE, for white backgroundsPNG · SVG
• 
  Lab under SE, for green backgroundsPNG

Badge, from the MOOSE sticker

• 
  Lab badge, for white backgroundsPNG · SVG
• 
  Lab badge, for green backgroundsPNG · SVG
• 
  Ensemble badge, for white backgroundsPNG · SVG
• 
  Ensemble badge, for green backgroundsPNG · SVG

Institutional logos

Use the official files from each institution's own brand pages, and follow their rules. These logos are for Dartmouth and Dartmouth Health business only.

• Geisel visual identity guide, with logo downloads and Geisel's slide and document templates (NetID needed off campus)
• Dartmouth design guidelines and department and office logos
• Dartmouth Health: the Dartmouth Health logo is already in the slide and poster templates above. For other uses, ask Dartmouth Health Marketing and Communications.

Colours, fonts and figures

• Lab green #00664F
• Mint #6ECEB2
• Deep green #0E2F26

• Figure guide: sizes, fonts and colour-blind-safe colours
• moose.mplstyle, the matplotlib style file

Presenting

• Talk tips for a short research talk

• 
  Video background, greenPNG, 1920 × 1080
• 
  Video background, whitePNG, 1920 × 1080